Laboratory of Microbial Genomics and Big Data (강원대학교 미생물유전체빅데이터 연구실)

R: Basics - Functions, Packages, Help - by Eun Bae Kim (08/22/2018)
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# For Functions used for objects ###############################################
numEng = c(78, 88.4, 67.5, 33.3, 95, 92)
txtNames = c("EBKim", "GDJin", "JBPark", "IHYou", "JHWon", "SJChoi")
logicData = c(TRUE, FALSE, TRUE, TRUE, FALSE, TRUE)
matrixNew = matrix(1:36, ncol=12); matrixNew     # Filed by Columns
dfData = data.frame(txtNames, numEng, logicData)
factorGender = factor(c("Female", "Male", "Female", "Male", "Female"))


length(numEng)			# number of elements or components

str(numEng)			# structure of an object 
str(txtNames)
str(logicData)
str(matrixNew)
str(dfData)
str(factorGender)


class(numEng)			# class or type of an object
class(txtNames)
class(logicData)
class(matrixNew)
class(dfData)
class(factorGender)

names(matrixNew)		# column names
names(dfData)
colnames(dfData)		# column names
rownames(dfData)		# row names

ls()				# list current objects
rm(dfData)			# delete an object
ls()

edit(matrixNew)			# Not saved the changes after closing the editor
matrixNew
newObj <- edit(matrixNew)	# edit copy and save as newobject
newObj
fix(newObj)			# edit in place
newObj



# For R Packages ################################################################
install.packages("ggplot2")
library("ggplot2")
library()
installed.packages();
edit(installed.packages()[, c("Package", "Version")])

# Installing packages from Github
install.packages("devtools")
library("devtools")
install_github("cran/gplots")     # https://github.com/cran/gplots


library("devtools")
install("C:/Users/ebkim/Downloads/gplots-master")    # zip extracted



# For help ################################################################
help(plot)
?plot
?ggplot2::gplot



Kangwon National University