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Analysis Tools

Bioinformatic Tools on Web.

• Clustal Omega: Multiple Sequence Alignment. [Web]
• BlastN: Nucleotide Search. [Web]
• BLAT: Genome Browser. [Web]
• Color Align Conservation (Sequence Manipulation Suite) [Web]
• MAFFT: Multiple alignment program for amino acid or nucleotide sequences. [Web]
• MUSCLE: [Multiple Alignment.]

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• BPROM: Promoter Prediction. [Web]
• FindTerm: Terminator Prediction. [Web]
• dsDNA: Mass to/from Moles Convertor (NEBioCalculator). [Web]
• CDS Translation - Expasy. [Web]
• Reverse Complement. [Web]

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• RAST: Genome Annotation. [Web]
• MG-RAST: Metagenome Analysis. [Web] [Web]
• CRISPRCasFinder. [Web]
• CAP3: DNA Assembler. [Web]
• CGView: Circular Genome Viewer. [Web]
• DNA Molecular Weight (Sequence Manipulation Suite). [Web]
• Codon Usage (Sequence Manipulation Suite). [Web]
• Protein Isoelectric Point (Sequence Manipulation Suite). [Web]
• Protein Molecular Weight (Sequence Manipulation Suite). [Web]
• COG Search. [Web]

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• ArrayMining: Microarray Data Mining. [Web]

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• Anne O'Tate: PubMed Mining. [Web]
• Broad Institute - Data, Software and Tools. [Web]

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• CPPpred:CPP Prediction. [Web]

Bioinformatics Databases

• NCBI Submission. [Web]
• Prokaryotic and Eukaryotic Genomes Submission Guide. [Web]
• COG: Clusters of Orthologous Genes. [Web]
• Blast2GO. [Web]
• OrthoMam - Orthologs from Mammals. [Web]
• GOA Proteom Files. [Web]

Bioinformatic Tools on Linux.

• Roary: Pangenome Analysis. [Web]
• Prokka: Genome Annotation. [Web]
• BactSNP: Finding SNPs from Bacterial Genomes. [Web]
• VariantDetective: Variant Detector. [Web]
• Docker for Qiime2. [Web]

Formats.

• (Summarized by EBKim). [PNG]
• (Summarized by EBKim). [PNG]
• (Summarized by EBKim). [ZIP]
• (Summarized by EBKim). [PNG]
• (Summarized by EBKim). [PPT]