include '../variables.php'; ?>
echo($sLabName);?>1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 | use strict; use Bio::SeqIO; # Making a file in the Fasta Format. my $sFastaFile = "Fasta_Example.fasta"; open(hOut, ">".$sFastaFile) or die; print hOut ">Seq1 Example Sequence 1\n"; print hOut "ACTGCATGAGTCGTAGTGTCGTACTATCGATGCAGTAGACTGATCGATCGTTACATTCAT\n"; print hOut "TCAGACTGTAGACAAAAAGGAGTTGGCAATCAAACCAGCTCCTTTTTACTATCCTTTGTG\n"; print hOut "TAAATTTGGAACAAAAAGC\n\n"; print hOut ">Seq2 Example Sequence 2\n"; print hOut "AACAAAGCGATTACACTGTTTAGTTTACTAACAGTCCTAATCGCTTTTTTTATTTCCCCT\n"; print hOut "ATTACTACATTCGCTGCTACAGTAAATTATGAAAAAGTAGCGAACTATATTTCCACATGG\n"; print hOut "CATGTTAAGTCATTAGGCGGTTTACACTGGACTGATGAAGGCATCCATATGATTAAAGCG\n\n"; print hOut ">Seq3 Example Sequence 3\n"; print hOut "ATGGAACACTTCTTACTGGTGGTTCTGGATTCACCCCATCTGAACTAACTATTGCAGA\n"; close(hOut); # Reference: # https://metacpan.org/pod/Bio::SeqIO my $oFasta = Bio::SeqIO->new(-file => $sFastaFile, -format => 'fasta'); my $iSeqCnt = 0; print "--------------------------------------------\n"; print "Target File: ".$sFastaFile."\n"; print "--------------------------------------------\n"; while( my $oSeq = $oFasta->next_seq() ) { $iSeqCnt++; my $sSeqId = $oSeq->display_id(); # Sequence ID my $sDesc = $oSeq->desc(); # Sequence Description my $sSeq = $oSeq->seq(); # Sequence print "Sequenc Cnt : ".$iSeqCnt."\n"; print "Seq ID : ".$sSeqId. "\n"; print "Seq Description : ".$sDesc. "\n"; print "Seq : ".$sSeq. "\n"; print "-----------------------------------\n"; } |